Dai Y, Aizenbud L, Qin K, Austin M, Jaycox J, Cunningham J, Wang E, Zhang L, Fischer S, Carroll S, van Aggelen H, Kluger Y, Herold K, Furchtgott L, Kluger H, Ring A
.
2025.
Humoral determinants of checkpoint immunotherapy.
Nature
Reyes-Gopar H, Marston J, Singh B, Greenig M, Lin J, Ostrowski M, Randall K, Sandoval-Motta S, Dopkins N, Lawrence E, O'Mara M, Fei T, Duarte R, Powell T, Hernández-Lemus E, Iñiguez L, Nixon D, Bendall M
.
2025.
A single-cell transposable element atlas of human cell identity.
Cell Rep Methods
Jalan M, Brambati A, Shah H, McDermott N, Patel J, Zhu Y, Doymaz A, Wu J, Anderson K, Gazzo A, Pareja F, Yamaguchi T, Vougiouklakis T, Ahmed-Seghir S, Steinberg P, Neiman-Golden A, Azeroglu B, Gomez-Aguilar J, da Silva E, Hussain S, Higginson D, Boutros P, Riaz N, Reis-Filho J, Powell S, Sfeir A
.
2025.
RNA transcripts serve as a template for double-strand break repair in human cells.
Nat Commun
Jalan M, Brambati A, Shah H, McDermott N, Patel J, Zhu Y, Doymaz A, Wu J, Anderson K, Gazzo A, Pareja F, Yamaguchi T, Vougiouklakis T, Ahmed-Seghir S, Steinberg P, Neiman-Golden A, Azeroglu B, Gomez-Aguilar J, da Silva E, Hussain S, Higginson D, Boutros P, Riaz N, Reis-Filho J, Powell S, Sfeir A
.
2025.
RNA Transcripts Serve as a Template for Double-Strand Break Repair in Human Cells.
bioRxiv
Moorman A, Benitez E, Cambuli F, Jiang Q, Mahmoud A, Lumish M, Hartner S, Balkaran S, Bermeo J, Asawa S, Firat C, Saxena A, Wu F, Luthra A, Burdziak C, Xie Y, Sgambati V, Luckett K, Li Y, Yi Z, Masilionis I, Soares K, Pappou E, Yaeger R, Kingham T, Jarnagin W, Paty P, Weiser M, Mazutis L, D'Angelica M, Shia J, Garcia-Aguilar J, Nawy T, Hollmann T, Chaligné R, Sanchez-Vega F, Sharma R, Pe'er D, Ganesh K
.
2025.
Author Correction: Progressive plasticity during colorectal cancer metastasis.
Nature
Bifendeh A, Hsu K, McBride C, Ferguson C, Baumann E, Capcha-Rodriguez D, Chen X, Chery B, Chihade M, Umpierre P, Evans T, Everett C, Faheem S, Garrett O, Gottesfeld A, Gupta I, Haas J, Haupt T, Katz J, Kim S, Langer M, Le V, Li K, Zhao B, Lin S, Mabry K, Malkov A, Marquis A, McDonnell K, Min K, Mostaghim N, Nichols K, Osbaldeston R, Phan T, Ponte A, Qaraqe T, Rosas B, Smith C, Smith L, Smith M, Soll A, Sotero G, Thornberry I, Tran K, Vo Q, Yoc-Bautista M, Young M, Zukowski K, Fairman R, Wodzanowski K, Herrera M, Cho Y, Charkoudian L
.
2024.
Exploring the compatibility of phosphopantetheinyl transferases with acyl carrier proteins spanning type II polyketide synthase sequence space.
J Ind Microbiol Biotechnol
Bowman R, Dunbar A, Mishra T, Xiao W, Waarts M, Maestre I, Eisman S, Cai L, Mowla S, Shah N, Youn A, Bennett L, Fontenard S, Gounder S, Gandhi A, Bowman M, O'Connor K, Zaroogian Z, Sánchez-Vela P, Martinez Benitez A, Werewski M, Park Y, Csete I, Krishnan A, Lee D, Boorady N, Potts C, Jenkins M, Cai S, Carroll M, Meyer S, Miles L, Ferrell P, Trowbridge J, Levine R
.
2024.
In vivo models of subclonal oncogenesis and dependency in hematopoietic malignancy.
Cancer Cell
Moorman A, Benitez E, Cambulli F, Jiang Q, Mahmoud A, Lumish M, Hartner S, Balkaran S, Bermeo J, Asawa S, Firat C, Saxena A, Wu F, Luthra A, Burdziak C, Xie Y, Sgambati V, Luckett K, Li Y, Yi Z, Masilionis I, Soares K, Pappou E, Yaeger R, Kingham T, Jarnagin W, Paty P, Weiser M, Mazutis L, D'Angelica M, Shia J, Garcia-Aguilar J, Nawy T, Hollmann T, Chaligné R, Sanchez-Vega F, Sharma R, Pe'er D, Ganesh K
.
2024.
Progressive plasticity during colorectal cancer metastasis.
Nature
Gagne M, Flynn B, Honeycutt C, Flebbe D, Andrew S, Provost S, McCormick L, Van Ry A, McCarthy E, Todd J, Bao S, Teng I, Marciano S, Rudich Y, Li C, Jain S, Wali B, Pessaint L, Dodson A, Cook A, Lewis M, Andersen H, Zahradník J, Suthar M, Nason M, Foulds K, Kwong P, Roederer M, Schreiber G, Seder R, Douek D
.
2024.
Variant-proof high affinity ACE2 antagonist limits SARS-CoV-2 replication in upper and lower airways.
Nat Commun
Dunbar A, Bowman R, Park Y, O'Connor K, Izzo F, Myers R, Karzai A, Zaroogian Z, Kim W, Fernández-Maestre I, Waarts M, Nazir A, Xiao W, Codilupi T, Brodsky M, Farina M, Cai L, Cai S, Wang B, An W, Yang J, Mowla S, Eisman S, Hanasoge Somasundara A, Glass J, Mishra T, Houston R, Guzzardi E, Martinez Benitez A, Viny A, Koche R, Meyer S, Landau D, Levine R
.
2024.
Jak2V617F Reversible Activation Shows Its Essential Requirement in Myeloproliferative Neoplasms.
Cancer Discov
Reyes-Gopar H, Marston J, Singh B, Greenig M, Lin J, Ostrowski M, Randall K, Sandoval-Motta S, Dopkins N, Lawrence E, O'Mara M, Fei T, Duarte R, Powell T, Hernandez-Lemus E, Iniguez L, Nixon D, Bendall M
.
2023.
A single-cell transposable element atlas of human cell identity.
bioRxiv
Lin T, Ramsamooj S, Perrier T, Liberatore K, Lantier L, Vasan N, Karukurichi K, Hwang S, Kesicki E, Kastenhuber E, Wiederhold T, Yaron T, Huntsman E, Zhu M, Ma Y, Paddock M, Zhang G, Hopkins B, McGuinness O, Schwartz R, Ersoy B, Cantley L, Johnson J, Goncalves M
.
2023.
Epinephrine inhibits PI3Kα via the Hippo kinases.
Cell Rep
Lee K, Woodbury M, Zundell M, Aguero R, Yousif J, Williams S, Rosmarin D, Silverberg N, Thiboutot D, Larocca C, Shinohara M, Mostaghimi A, Stander S, Martorell A, Jaleel T, Torbeck R, Siegel D, Perez-Chada L, Strand V, Armstrong A, Merola J, Gottlieb A
.
2023.
International Dermatology Outcome Measures (IDEOM) - Report from the 2022 Annual Meeting.
J Drugs Dermatol
Moliva J, Andrew S, Flynn B, Wagner D, Foulds K, Gagne M, Flebbe D, Lamb E, Provost S, Marquez J, Mychalowych A, Lorag C, Honeycutt C, Burnett M, McCormick L, Henry A, Godbole S, Davis-Gardner M, Minai M, Bock K, Nagata B, Todd J, McCarthy E, Dodson A, Kouneski K, Cook A, Pessaint L, Ry A, Valentin D, Young S, Littman Y, Boon A, Suthar M, Lewis M, Andersen H, Alves D, Woodward R, Leuzzi A, Vitelli A, Colloca S, Folgori A, Raggiolli A, Capone S, Nason M, Douek D, Roederer M, Seder R, Sullivan N
.
2023.
Durable immunity to SARS-CoV-2 in both lower and upper airways achieved with a gorilla adenovirus (GRAd) S-2P vaccine in non-human primates.
bioRxiv
Liu Y, Liu S, Tomar A, Yen F, Unlu G, Ropek N, Weber R, Wang Y, Khan A, Gad M, Peng J, Terzi E, Alwaseem H, Pagano A, Heissel S, Molina H, Allwein B, Kenny T, Possemato R, Zhao L, Hite R, Vinogradova E, Mansy S, Birsoy K
.
2023.
Autoregulatory control of mitochondrial glutathione homeostasis.
Science
Moorman A, Cambuli F, Benitez E, Jiang Q, Xie Y, Mahmoud A, Lumish M, Hartner S, Balkaran S, Bermeo J, Asawa S, Firat C, Saxena A, Luthra A, Sgambati V, Luckett K, Wu F, Li Y, Yi Z, Masilionis I, Soares K, Pappou E, Yaeger R, Kingham P, Jarnagin W, Paty P, Weiser M, Mazutis L, D'Angelica M, Shia J, Garcia-Aguilar J, Nawy T, Hollmann T, Chaligné R, Sanchez-Vega F, Sharma R, Pe'er D, Ganesh K
.
2023.
Progressive plasticity during colorectal cancer metastasis.
bioRxiv
Cortés-López M, Chamely P, Hawkins A, Stanley R, Swett A, Ganesan S, Mouhieddine T, Dai X, Kluegel L, Chen C, Batta K, Furer N, Vedula R, Beaulaurier J, Drong A, Hickey S, Dusaj N, Mullokandov G, Stasiw A, Su J, Chaligné R, Juul S, Harrington E, Knowles D, Potenski C, Wiseman D, Tanay A, Shlush L, Lindsley R, Ghobrial I, Taylor J, Abdel-Wahab O, Gaiti F, Landau D
.
2023.
Single-cell multi-omics defines the cell-type-specific impact of splicing aberrations in human hematopoietic clonal outgrowths.
Cell Stem Cell
Rashidfarrokhi A, Pillai R, Hao Y, Wu W, Karadal-Ferrena B, Dimitriadoy S, Cross M, Yeaton A, Huang S, Bhutkar A, Herrera A, Rajalingam S, Hayashi M, Huang K, Bartnicki E, Zavitsanou A, Wohlhieter C, Leboeuf S, Chen T, Loomis C, Mezzano V, Kulicke R, Davis F, Stransky N, Smolen G, Rudin C, Moreira A, Khanna K, Pass H, Wong K, Koide S, Tsirigos A, Koralov S, Papagiannakopoulos T
.
2023.
Tumor-intrinsic LKB1-LIF signaling axis establishes a myeloid niche to promote immune evasion and tumor growth.
bioRxiv
Karargyris A, Umeton R, Sheller M, Aristizabal A, George J, Wuest A, Pati S, Kassem H, Zenk M, Baid U, Narayana Moorthy P, Chowdhury A, Guo J, Nalawade S, Rosenthal J, Kanter D, Xenochristou M, Beutel D, Chung V, Bergquist T, Eddy J, Abid A, Tunstall L, Sanseviero O, Dimitriadis D, Qian Y, Xu X, Liu Y, Goh R, Bala S, Bittorf V, Reddy Puchala S, Ricciuti B, Samineni S, Sengupta E, Chaudhari A, Coleman C, Desinghu B, Diamos G, Dutta D, Feddema D, Fursin G, Huang X, Kashyap S, Lane N, Mallick I, Mascagni P, Mehta V, Ferro Moraes C, Natarajan V, Nikolov N, Padoy N, Pekhimenko G, Reddi V, Reina G, Ribalta P, Singh A, Thiagarajan J, Albrecht J, Wolf T, Miller G, Fu H, Shah P, Xu D, Yadav P, Talby D, Awad M, Howard J, Rosenthal M, Marchionni L, Loda M, Johnson J, Bakas S, Mattson P
.
2023.
Federated benchmarking of medical artificial intelligence with MedPerf.
Nat Mach Intell
Choudhury A, Cady M, Lucas C, Najem H, Phillips J, Palikuqi B, Zakimi N, Joseph T, Birrueta J, Chen W, Bush N, Hervey-Jumper S, Klein O, Toedebusch C, Horbinski C, Magill S, Bhaduri A, Perry A, Dickinson P, Heimberger A, Ashworth A, Crouch E, Raleigh D
.
2023.
NOTCH3 drives meningioma tumorigenesis and resistance to radiotherapy.
bioRxiv
Dunbar A, Kim D, Lu M, Farina M, Bowman R, Yang J, Park Y, Karzai A, Xiao W, Zaroogian Z, O'Connor K, Mowla S, Gobbo F, Verachi P, Martelli F, Sarli G, Xia L, Elmansy N, Kleppe M, Chen Z, Xiao Y, McGovern E, Snyder J, Krishnan A, Hill C, Cordner K, Zouak A, Salama M, Yohai J, Tucker E, Chen J, Zhou J, McConnell T, Migliaccio A, Koche R, Rampal R, Fan R, Levine R, Hoffman R
.
2023.
CXCL8/CXCR2 signaling mediates bone marrow fibrosis and is a therapeutic target in myelofibrosis.
Blood
Eiger D, Smith J, Shi T, Stepniewski T, Tsai C, Honeycutt C, Boldizsar N, Gardner J, Nicora C, Moghieb A, Kawakami K, Choi I, Hicks C, Zheng K, Warman A, Alagesan P, Knape N, Huang O, Silverman J, Smith R, Inoue A, Selent J, Jacobs J, Rajagopal S
.
2023.
Phosphorylation barcodes direct biased chemokine signaling at CXCR3.
Cell Chem Biol
Eiger D, Smith J, Shi T, Stepniewski T, Tsai C, Honeycutt C, Boldizsar N, Gardner J, Nicora C, Moghieb A, Kawakami K, Choi I, Zheng K, Warman A, Alagesan P, Knape N, Huang O, Silverman J, Smith R, Inoue A, Selent J, Jacobs J, Rajagopal S
.
2023.
Phosphorylation barcodes direct biased chemokine signaling at CXCR3.
bioRxiv
Gristick H, Hartweger H, Loewe M, van Schooten J, Ramos V, Oliveira T, Nishimura Y, Koranda N, Wall A, Yao K, Poston D, Gazumyan A, Wiatr M, Horning M, Keeffe J, Hoffmann M, Yang Z, Abernathy M, Dam K, Gao H, Gnanapragasam P, Kakutani L, Pavlovitch-Bedzyk A, Seaman M, Howarth M, McGuire A, Stamatatos L, Martin M, West A, Nussenzweig M, Bjorkman P
.
2023.
CD4 binding site immunogens elicit heterologous anti-HIV-1 neutralizing antibodies in transgenic and wild-type animals.
Sci Immunol
Johnson J, Yaron T, Huntsman E, Kerelsky A, Song J, Regev A, Lin T, Liberatore K, Cizin D, Cohen B, Vasan N, Ma Y, Krismer K, Robles J, van de Kooij B, van Vlimmeren A, Andrée-Busch N, Käufer N, Dorovkov M, Ryazanov A, Takagi Y, Kastenhuber E, Goncalves M, Hopkins B, Elemento O, Taatjes D, Maucuer A, Yamashita A, Degterev A, Uduman M, Lu J, Landry S, Zhang B, Cossentino I, Linding R, Blenis J, Hornbeck P, Turk B, Yaffe M, Cantley L
.
2023.
An atlas of substrate specificities for the human serine/threonine kinome.
Nature
Ramos-Benitez M, Strich J, Alehashemi S, Stein S, Rastegar A, de Jesus A, Bhuyan F, Ramelli S, Babyak A, Perez-Valencia L, Vannella K, Grubbs G, Khurana S, Gross R, Hadley K, Liang J, Mazur S, Postnikova E, Warner S, Holbrook M, Busch L, Warner B, Applefeld W, Warner S, Kadri S, Davey R, Goldbach-Mansky R, Chertow D
.
2022.
Antiviral innate immunity is diminished in the upper respiratory tract of severe COVID-19 patients.
medRxiv
Chen S, Vedula R, Cuevas-Navarro A, Lu B, Hogg S, Wang E, Benbarche S, Knorr K, Kim W, Stanley R, Cho H, Erickson C, Singer M, Cui D, Tittley S, Durham B, Pavletich T, Fiala E, Walsh M, Inoue D, Monette S, Taylor J, Rosen N, McCormick F, Lindsley R, Castel P, Abdel-Wahab O
.
2022.
Impaired Proteolysis of Noncanonical RAS Proteins Drives Clonal Hematopoietic Transformation.
Cancer Discov
Akagbosu B, Tayyebi Z, Shibu G, Paucar Iza Y, Deep D, Parisotto Y, Fisher L, Pasolli H, Thevin V, Elmentaite R, Knott M, Hemmers S, Jahn L, Friedrich C, Verter J, Wang Z, van den Brink M, Gasteiger G, Grünewald T, Marie J, Leslie C, Rudensky A, Brown C
.
2022.
Novel antigen-presenting cell imparts Treg-dependent tolerance to gut microbiota.
Nature
Chan J, Zaidi S, Love J, Zhao J, Setty M, Wadosky K, Gopalan A, Choo Z, Persad S, Choi J, LaClair J, Lawrence K, Chaudhary O, Xu T, Masilionis I, Linkov I, Wang S, Lee C, Barlas A, Morris M, Mazutis L, Chaligne R, Chen Y, Goodrich D, Karthaus W, Pe'er D, Sawyers C
.
2022.
Lineage plasticity in prostate cancer depends on JAK/STAT inflammatory signaling.
Science
Herre M, Goldman O, Lu T, Caballero-Vidal G, Qi Y, Gilbert Z, Gong Z, Morita T, Rahiel S, Ghaninia M, Ignell R, Matthews B, Li H, Vosshall L, Younger M
.
2022.
Non-canonical odor coding in the mosquito.
Cell
Weiss J, Hunter M, Cruz N, Baggiolini A, Tagore M, Ma Y, Misale S, Marasco M, Simon-Vermot T, Campbell N, Newell F, Wilmott J, Johansson P, Thompson J, Long G, Pearson J, Mann G, Scolyer R, Waddell N, Montal E, Huang T, Jonsson P, Donoghue M, Harris C, Taylor B, Xu T, Chaligné R, Shliaha P, Hendrickson R, Jungbluth A, Lezcano C, Koche R, Studer L, Ariyan C, Solit D, Wolchok J, Merghoub T, Rosen N, Hayward N, White R
.
2022.
Anatomic position determines oncogenic specificity in melanoma.
Nature
Gagne M, Moliva J, Foulds K, Andrew S, Flynn B, Werner A, Wagner D, Teng I, Lin B, Moore C, Jean-Baptiste N, Carroll R, Foster S, Patel M, Ellis M, Edara V, Maldonado N, Minai M, McCormick L, Honeycutt C, Nagata B, Bock K, Dulan C, Cordon J, Flebbe D, Todd J, McCarthy E, Pessaint L, Van Ry A, Narvaez B, Valentin D, Cook A, Dodson A, Steingrebe K, Nurmukhambetova S, Godbole S, Henry A, Laboune F, Roberts-Torres J, Lorang C, Amin S, Trost J, Naisan M, Basappa M, Willis J, Wang L, Shi W, Doria-Rose N, Zhang Y, Yang E, Leung K, O'Dell S, Schmidt S, Olia A, Liu C, Harris D, Chuang G, Stewart-Jones G, Renzi I, Lai Y, Malinowski A, Wu K, Mascola J, Carfi A, Kwong P, Edwards D, Lewis M, Andersen H, Corbett K, Nason M, McDermott A, Suthar M, Moore I, Roederer M, Sullivan N, Douek D, Seder R
.
2022.
mRNA-1273 or mRNA-Omicron boost in vaccinated macaques elicits similar B cell expansion, neutralizing responses, and protection from Omicron.
Cell
Tracy T, Madero-Pérez J, Swaney D, Chang T, Moritz M, Konrad C, Ward M, Stevenson E, Hüttenhain R, Kauwe G, Mercedes M, Sweetland-Martin L, Chen X, Mok S, Wong M, Telpoukhovskaia M, Min S, Wang C, Sohn P, Martin J, Zhou Y, Luo W, Trojanowski J, Lee V, Gong S, Manfredi G, Coppola G, Krogan N, Geschwind D, Gan L
.
2022.
Tau interactome maps synaptic and mitochondrial processes associated with neurodegeneration.
Cell
Vannella K, Oguz C, Stein S, Pittaluga S, Dikoglu E, Kanwal A, Ramelli S, Briese T, Su L, Wu X, Ramos-Benitez M, Perez-Valencia L, Babyak A, Cha N, Chung J, Ylaya K, Madathil R, Saharia K, Scalea T, Tran Q, Herr D, Kleiner D, Hewitt S, Notarangelo L, Grazioli A, Chertow D
.
2021.
Evidence of SARS-CoV-2-Specific T-Cell-Mediated Myocarditis in a MIS-A Case.
Front Immunol
Gagne M, Corbett K, Flynn B, Foulds K, Wagner D, Andrew S, Todd J, Honeycutt C, McCormick L, Nurmukhambetova S, Davis-Gardner M, Pessaint L, Bock K, Nagata B, Minai M, Werner A, Moliva J, Tucker C, Lorang C, Zhao B, McCarthy E, Cook A, Dodson A, Teng I, Mudvari P, Roberts-Torres J, Laboune F, Wang L, Goode A, Kar S, Boyoglu-Barnum S, Yang E, Shi W, Ploquin A, Doria-Rose N, Carfi A, Mascola J, Boritz E, Edwards D, Andersen H, Lewis M, Suthar M, Graham B, Roederer M, Moore I, Nason M, Sullivan N, Douek D, Seder R
.
2021.
Protection from SARS-CoV-2 Delta one year after mRNA-1273 vaccination in rhesus macaques coincides with anamnestic antibody response in the lung.
Cell
Gagne M, Corbett K, Flynn B, Foulds K, Wagner D, Andrew S, Todd J, Honeycutt C, McCormick L, Nurmukhambetova S, Davis-Gardner M, Pessaint L, Bock K, Nagata B, Minai M, Werner A, Moliva J, Tucker C, Lorang C, Zhao B, McCarthy E, Cook A, Dodson A, Mudvari P, Roberts-Torres J, Laboune F, Wang L, Goode A, Kar S, Boyoglu-Barnum S, Yang E, Shi W, Ploquin A, Doria-Rose N, Carfi A, Mascola J, Boritz E, Edwards D, Andersen H, Lewis M, Suthar M, Graham B, Roederer M, Moore I, Nason M, Sullivan N, Douek D, Seder R
.
2021.
Protection from SARS-CoV-2 Delta one year after mRNA-1273 vaccination in nonhuman primates is coincident with an anamnestic antibody response in the lower airway.
bioRxiv
Baggiolini A, Callahan S, Montal E, Weiss J, Trieu T, Tagore M, Tischfield S, Walsh R, Suresh S, Fan Y, Campbell N, Perlee S, Saurat N, Hunter M, Simon-Vermot T, Huang T, Ma Y, Hollmann T, Tickoo S, Taylor B, Khurana E, Koche R, Studer L, White R
.
2021.
Developmental chromatin programs determine oncogenic competence in melanoma.
Science
Takahashi T, Ellingson M, Wong P, Israelow B, Lucas C, Klein J, Silva J, Mao T, Oh J, Tokuyama M, Lu P, Venkataraman A, Park A, Liu F, Meir A, Sun J, Wang E, Casanovas-Massana A, Wyllie A, Vogels C, Earnest R, Lapidus S, Ott I, Moore A, Shaw A, Fournier J, Odio C, Farhadian S, Dela Cruz C, Grubaugh N, Schulz W, Ring A, Ko A, Omer S, Iwasaki A
.
2021.
Reply to: A finding of sex similarities rather than differences in COVID-19 outcomes.
Nature
Oren Y, Tsabar M, Cuoco M, Amir-Zilberstein L, Cabanos H, Hütter J, Hu B, Thakore P, Tabaka M, Fulco C, Colgan W, Cuevas B, Hurvitz S, Slamon D, Deik A, Pierce K, Clish C, Hata A, Zaganjor E, Lahav G, Politi K, Brugge J, Regev A
.
2021.
Cycling cancer persister cells arise from lineages with distinct programs.
Nature
Ogishi M, Yang R, Aytekin C, Langlais D, Bourgey M, Khan T, Ali F, Rahman M, Delmonte O, Chrabieh M, Zhang P, Gruber C, Pelham S, Spaan A, Rosain J, Lei W, Drutman S, Hellmann M, Callahan M, Adamow M, Wong P, Wolchok J, Rao G, Ma C, Nakajima Y, Yaguchi T, Chamoto K, Williams S, Emile J, Rozenberg F, Glickman M, Rapaport F, Kerner G, Allington G, Tezcan I, Cagdas D, Hosnut F, Dogu F, Ikinciogullari A, Rao V, Kainulainen L, Béziat V, Bustamante J, Vilarinho S, Lifton R, Boisson B, Abel L, Bogunovic D, Marr N, Notarangelo L, Tangye S, Honjo T, Gros P, Boisson-Dupuis S, Casanova J
.
2021.
Inherited PD-1 deficiency underlies tuberculosis and autoimmunity in a child.
Nat Med
Puray-Chavez M, LaPak K, Schrank T, Elliott J, Bhatt D, Agajanian M, Jasuja R, Lawson D, Davis K, Rothlauf P, Liu Z, Jo H, Lee N, Tenneti K, Eschbach J, Shema Mugisha C, Cousins E, Cloer E, Vuong H, VanBlargan L, Bailey A, Gilchuk P, Crowe J, Diamond M, Hayes D, Whelan S, Horani A, Brody S, Goldfarb D, Major M, Kutluay S
.
2021.
Systematic analysis of SARS-CoV-2 infection of an ACE2-negative human airway cell.
Cell Rep
Hogg S, Motorna O, Cluse L, Johanson T, Coughlan H, Raviram R, Myers R, Costacurta M, Todorovski I, Pijpers L, Bjelosevic S, Williams T, Huskins S, Kearney C, Devlin J, Fan Z, Jabbari J, Martin B, Fareh M, Kelly M, Dupéré-Richer D, Sandow J, Feran B, Knight D, Khong T, Spencer A, Harrison S, Gregory G, Wickramasinghe V, Webb A, Taberlay P, Bromberg K, Lai A, Papenfuss A, Smyth G, Allan R, Licht J, Landau D, Abdel-Wahab O, Shortt J, Vervoort S, Johnstone R
.
2021.
Targeting histone acetylation dynamics and oncogenic transcription by catalytic P300/CBP inhibition.
Mol Cell
Wang E, Mao T, Klein J, Dai Y, Huck J, Jaycox J, Liu F, Zhou T, Israelow B, Wong P, Coppi A, Lucas C, Silva J, Oh J, Song E, Perotti E, Zheng N, Fischer S, Campbell M, Fournier J, Wyllie A, Vogels C, Ott I, Kalinich C, Petrone M, Watkins A, Dela Cruz C, Farhadian S, Schulz W, Ma S, Grubaugh N, Ko A, Iwasaki A, Ring A
.
2021.
Diverse functional autoantibodies in patients with COVID-19.
Nature
Yang C, Zhou Y, Marcus S, Formenti G, Bergeron L, Song Z, Bi X, Bergman J, Rousselle M, Zhou C, Zhou L, Deng Y, Fang M, Xie D, Zhu Y, Tan S, Mountcastle J, Haase B, Balacco J, Wood J, Chow W, Rhie A, Pippel M, Fabiszak M, Koren S, Fedrigo O, Freiwald W, Howe K, Yang H, Phillippy A, Schierup M, Jarvis E, Zhang G
.
2021.
Evolutionary and biomedical insights from a marmoset diploid genome assembly.
Nature
Huang N, Pérez P, Kato T, Mikami Y, Okuda K, Gilmore R, Conde C, Gasmi B, Stein S, Beach M, Pelayo E, Maldonado J, Lafont B, Jang S, Nasir N, Padilla R, Murrah V, Maile R, Lovell W, Wallet S, Bowman N, Meinig S, Wolfgang M, Choudhury S, Novotny M, Aevermann B, Scheuermann R, Cannon G, Anderson C, Lee R, Marchesan J, Bush M, Freire M, Kimple A, Herr D, Rabin J, Grazioli A, Das S, French B, Pranzatelli T, Chiorini J, Kleiner D, Pittaluga S, Hewitt S, Burbelo P, Chertow D, Frank K, Lee J, Boucher R, Teichmann S, Warner B, Byrd K
.
2021.
SARS-CoV-2 infection of the oral cavity and saliva.
Nat Med
Puray-Chavez M, LaPak K, Schrank T, Elliott J, Bhatt D, Agajanian M, Jasuja R, Lawson D, Davis K, Rothlauf P, Jo H, Lee N, Tenneti K, Eschbach J, Mugisha C, Vuong H, Bailey A, Hayes D, Whelan S, Horani A, Brody S, Goldfarb D, Major M, Kutluay S
.
2021.
Systematic analysis of SARS-CoV-2 infection of an ACE2-negative human airway cell.
bioRxiv
Wang E, Mao T, Klein J, Dai Y, Huck J, Liu F, Zheng N, Zhou T, Israelow B, Wong P, Lucas C, Silva J, Oh J, Song E, Perotti E, Fischer S, Campbell M, Fournier J, Wyllie A, Vogels C, Ott I, Kalinich C, Petrone M, Watkins A, Cruz C, Farhadian S, Schulz W, Grubaugh N, Ko A, Iwasaki A, Ring A
.
2021.
Diverse Functional Autoantibodies in Patients with COVID-19.
medRxiv
Weisblum Y, Schmidt F, Zhang F, DaSilva J, Poston D, Lorenzi J, Muecksch F, Rutkowska M, Hoffmann H, Michailidis E, Gaebler C, Agudelo M, Cho A, Wang Z, Gazumyan A, Cipolla M, Luchsinger L, Hillyer C, Caskey M, Robbiani D, Rice C, Nussenzweig M, Hatziioannou T, Bieniasz P
.
2020.
Escape from neutralizing antibodies by SARS-CoV-2 spike protein variants.
Elife
Glasgow A, Glasgow J, Limonta D, Solomon P, Lui I, Zhang Y, Nix M, Rettko N, Zha S, Yamin R, Kao K, Rosenberg O, Ravetch J, Wiita A, Leung K, Lim S, Zhou X, Hobman T, Kortemme T, Wells J
.
2020.
Engineered ACE2 receptor traps potently neutralize SARS-CoV-2.
Proc Natl Acad Sci U S A
Takahashi T, Ellingson M, Wong P, Israelow B, Lucas C, Klein J, Silva J, Mao T, Oh J, Tokuyama M, Lu P, Venkataraman A, Park A, Liu F, Meir A, Sun J, Wang E, Casanovas-Massana A, Wyllie A, Vogels C, Earnest R, Lapidus S, Ott I, Moore A, Shaw A, Fournier J, Odio C, Farhadian S, Dela Cruz C, Grubaugh N, Schulz W, Ring A, Ko A, Omer S, Iwasaki A
.
2020.
Sex differences in immune responses that underlie COVID-19 disease outcomes.
Nature
Gomes A, Ilter D, Low V, Endress J, Fernández-García J, Rosenzweig A, Schild T, Broekaert D, Ahmed A, Planque M, Elia I, Han J, Kinzig C, Mullarky E, Mutvei A, Asara J, de Cabo R, Cantley L, Dephoure N, Fendt S, Blenis J
.
2020.
Age-induced accumulation of methylmalonic acid promotes tumour progression.
Nature
Weisblum Y, Schmidt F, Zhang F, DaSilva J, Poston D, Lorenzi J, Muecksch F, Rutkowska M, Hoffmann H, Michailidis E, Gaebler C, Agudelo M, Cho A, Wang Z, Gazumyan A, Cipolla M, Luchsinger L, Hillyer C, Caskey M, Robbiani D, Rice C, Nussenzweig M, Hatziioannou T, Bieniasz P
.
2020.
Escape from neutralizing antibodies by SARS-CoV-2 spike protein variants.
bioRxiv
Cai S, Chu S, Goldberg A, Parvin S, Koche R, Glass J, Stein E, Tallman M, Sen F, Famulare C, Cusan M, Huang C, Chen C, Zou L, Cordner K, DelGaudio N, Durani V, Kini M, Rex M, Tian H, Zuber J, Baslan T, Lowe S, Rienhoff H, Letai A, Levine R, Armstrong S
.
2020.
Leukemia Cell of Origin Influences Apoptotic Priming and Sensitivity to LSD1 Inhibition.
Cancer Discov
Takahashi T, Wong P, Ellingson M, Lucas C, Klein J, Israelow B, Silva J, Oh J, Mao T, Tokuyama M, Lu P, Venkataraman A, Park A, Liu F, Meir A, Sun J, Wang E, Wyllie A, Vogels C, Earnest R, Lapidus S, Ott I, Moore A, Casanovas-Massana A, Cruz C, Fournier J, Odio C, Farhadian S, Grubaugh N, Schulz W, Ko A, Ring A, Omer S, Iwasaki A
.
2020.
Sex differences in immune responses to SARS-CoV-2 that underlie disease outcomes.
medRxiv
Xu G, Chhangawala S, Cocco E, Razavi P, Cai Y, Otto J, Ferrando L, Selenica P, Ladewig E, Chan C, Da Cruz Paula A, Witkin M, Cheng Y, Park J, Serna-Tamayo C, Zhao H, Wu F, Sallaku M, Qu X, Zhao A, Collings C, D'Avino A, Jhaveri K, Koche R, Levine R, Reis-Filho J, Kadoch C, Scaltriti M, Leslie C, Baselga J, Toska E
.
2020.
ARID1A determines luminal identity and therapeutic response in estrogen-receptor-positive breast cancer.
Nat Genet
Inoue D, Chew G, Liu B, Michel B, Pangallo J, D'Avino A, Hitchman T, North K, Lee S, Bitner L, Block A, Moore A, Yoshimi A, Escobar-Hoyos L, Cho H, Penson A, Lu S, Taylor J, Chen Y, Kadoch C, Abdel-Wahab O, Bradley R
.
2019.
Spliceosomal disruption of the non-canonical BAF complex in cancer.
Nature
Robbiani D, Olsen P, Costa F, Wang Q, Oliveira T, Nery N, Aromolaran A, do Rosário M, Sacramento G, Cruz J, Khouri R, Wunder E, Mattos A, de Paula Freitas B, Sarno M, Archanjo G, Daltro D, Carvalho G, Pimentel K, de Siqueira I, de Almeida J, Henriques D, Lima J, Vasconcelos P, Schaefer-Babajew D, Azzopardi S, Bozzacco L, Gazumyan A, Belfort R, Alcântara A, Carvalho G, Moreira L, Araujo K, Reis M, Keesler R, Coffey L, Tisoncik-Go J, Gale M, Rajagopal L, Adams Waldorf K, Dudley D, Simmons H, Mejia A, O'Connor D, Steinbach R, Haese N, Smith J, Lewis A, Colgin L, Roberts V, Frias A, Kelleher M, Hirsch A, Streblow D, Rice C, MacDonald M, de Almeida A, Van Rompay K, Ko A, Nussenzweig M
.
2019.
Risk of Zika microcephaly correlates with features of maternal antibodies.
J Exp Med
Nam A, Kim K, Chaligne R, Izzo F, Ang C, Taylor J, Myers R, Abu-Zeinah G, Brand R, Omans N, Alonso A, Sheridan C, Mariani M, Dai X, Harrington E, Pastore A, Cubillos-Ruiz J, Tam W, Hoffman R, Rabadan R, Scandura J, Abdel-Wahab O, Smibert P, Landau D
.
2019.
Somatic mutations and cell identity linked by Genotyping of Transcriptomes.
Nature
Goncalves M, Lu C, Tutnauer J, Hartman T, Hwang S, Murphy C, Pauli C, Morris R, Taylor S, Bosch K, Yang S, Wang Y, Van Riper J, Lekaye H, Roper J, Kim Y, Chen Q, Gross S, Rhee K, Cantley L, Yun J
.
2019.
High-fructose corn syrup enhances intestinal tumor growth in mice.
Science
Matthews B, Dudchenko O, Kingan S, Koren S, Antoshechkin I, Crawford J, Glassford W, Herre M, Redmond S, Rose N, Weedall G, Wu Y, Batra S, Brito-Sierra C, Buckingham S, Campbell C, Chan S, Cox E, Evans B, Fansiri T, Filipović I, Fontaine A, Gloria-Soria A, Hall R, Joardar V, Jones A, Kay R, Kodali V, Lee J, Lycett G, Mitchell S, Muehling J, Murphy M, Omer A, Partridge F, Peluso P, Aiden A, Ramasamy V, Rašić G, Roy S, Saavedra-Rodriguez K, Sharan S, Sharma A, Smith M, Turner J, Weakley A, Zhao Z, Akbari O, Black W, Cao H, Darby A, Hill C, Johnston J, Murphy T, Raikhel A, Sattelle D, Sharakhov I, White B, Zhao L, Aiden E, Mann R, Lambrechts L, Powell J, Sharakhova M, Tu Z, Robertson H, McBride C, Hastie A, Korlach J, Neafsey D, Phillippy A, Vosshall L
.
2018.
Improved reference genome of Aedes aegypti informs arbovirus vector control.
Nature
Zhang M, Di Martino J, Bowman R, Campbell N, Baksh S, Simon-Vermot T, Kim I, Haldeman P, Mondal C, Yong-Gonzales V, Abu-Akeel M, Merghoub T, Jones D, Zhu X, Arora A, Ariyan C, Birsoy K, Wolchok J, Panageas K, Hollmann T, Bravo-Cordero J, White R
.
2018.
Adipocyte-Derived Lipids Mediate Melanoma Progression via FATP Proteins.
Cancer Discov
Gates Z, Vinogradov A, Quartararo A, Bandyopadhyay A, Choo Z, Evans E, Halloran K, Mijalis A, Mong S, Simon M, Standley E, Styduhar E, Tasker S, Touti F, Weber J, Wilson J, Jamison T, Pentelute B
.
2018.
Xenoprotein engineering via synthetic libraries.
Proc Natl Acad Sci U S A
Wu X, Dao Thi V, Huang Y, Billerbeck E, Saha D, Hoffmann H, Wang Y, Silva L, Sarbanes S, Sun T, Andrus L, Yu Y, Quirk C, Li M, MacDonald M, Schneider W, An X, Rosenberg B, Rice C
.
2017.
Intrinsic Immunity Shapes Viral Resistance of Stem Cells.
Cell
Xue Y, Martelotto L, Baslan T, Vides A, Solomon M, Mai T, Chaudhary N, Riely G, Li B, Scott K, Cechhi F, Stierner U, Chadalavada K, de Stanchina E, Schwartz S, Hembrough T, Nanjangud G, Berger M, Nilsson J, Lowe S, Reis-Filho J, Rosen N, Lito P
.
2017.
An approach to suppress the evolution of resistance in BRAFV600E-mutant cancer.
Nat Med
Robbiani D, Bozzacco L, Keeffe J, Khouri R, Olsen P, Gazumyan A, Schaefer-Babajew D, Avila-Rios S, Nogueira L, Patel R, Azzopardi S, Uhl L, Saeed M, Sevilla-Reyes E, Agudelo M, Yao K, Golijanin J, Gristick H, Lee Y, Hurley A, Caskey M, Pai J, Oliveira T, Wunder E, Sacramento G, Nery N, Orge C, Costa F, Reis M, Thomas N, Eisenreich T, Weinberger D, de Almeida A, West A, Rice C, Bjorkman P, Reyes-Teran G, Ko A, MacDonald M, Nussenzweig M
.
2017.
Recurrent Potent Human Neutralizing Antibodies to Zika Virus in Brazil and Mexico.
Cell
Boeynaems S, Bogaert E, Kovacs D, Konijnenberg A, Timmerman E, Volkov A, Guharoy M, De Decker M, Jaspers T, Ryan V, Janke A, Baatsen P, Vercruysse T, Kolaitis R, Daelemans D, Taylor J, Kedersha N, Anderson P, Impens F, Sobott F, Schymkowitz J, Rousseau F, Fawzi N, Robberecht W, Van Damme P, Tompa P, Van Den Bosch L
.
2017.
Phase Separation of C9orf72 Dipeptide Repeats Perturbs Stress Granule Dynamics.
Mol Cell
Patnaik A, Swanson K, Csizmadia E, Solanki A, Landon-Brace N, Gehring M, Helenius K, Olson B, Pyzer A, Wang L, Elemento O, Novak J, Thornley T, Asara J, Montaser L, Timmons J, Morgan T, Wang Y, Levantini E, Clohessy J, Kelly K, Pandolfi P, Rosenblatt J, Avigan D, Ye H, Karp J, Signoretti S, Balk S, Cantley L
.
2017.
Cabozantinib Eradicates Advanced Murine Prostate Cancer by Activating Antitumor Innate Immunity.
Cancer Discov
Hoshino A, Costa-Silva B, Shen T, Rodrigues G, Hashimoto A, Tesic Mark M, Molina H, Kohsaka S, Di Giannatale A, Ceder S, Singh S, Williams C, Soplop N, Uryu K, Pharmer L, King T, Bojmar L, Davies A, Ararso Y, Zhang T, Zhang H, Hernandez J, Weiss J, Dumont-Cole V, Kramer K, Wexler L, Narendran A, Schwartz G, Healey J, Sandstrom P, Labori K, Kure E, Grandgenett P, Hollingsworth M, de Sousa M, Kaur S, Jain M, Mallya K, Batra S, Jarnagin W, Brady M, Fodstad O, Muller V, Pantel K, Minn A, Bissell M, Garcia B, Kang Y, Rajasekhar V, Ghajar C, Matei I, Peinado H, Bromberg J, Lyden D
.
2015.
Tumour exosome integrins determine organotropic metastasis.
Nature
